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Genetic Code Gets More Sophisticated

February 10th, 2007 by Mike Gene

I have previously written about the genetic code from the perspective of design. A new study builds on this theme, suggesting that the genetic code is optimized on many different levels:

Alon and his doctoral student Shalev Itzkovitz compared the real genetic code to alternative, hypothetical genetic codes with equivalent codon-amino acid assignment characteristics. Remarkably, Itzkovitz and Alon showed that the real genetic code was superior to the vast majority of alternative genetic codes in terms of its ability to encode other information in protein-coding genes–such as splice sites, mRNA secondary structure, or regulatory signals.

Itzkovitz and Alon also demonstrated that the real genetic code provides for the quickest incorporation of a stop signal–compared to most of the alternative genetic codes–in cases where protein synthesis has gone amiss (situations that scientists call “frameshift errors”). This helps the cell to conserve its energy and resources.

“We think that the ability to carry parallel codes–or information beyond the amino acid code–may be a side effect of selection for avoiding aberrant protein synthesis,” says Itzkovitz. “These parallel codes were probably exploited during evolution to allow genes to support a wide range of signals to regulate and modify biological processes in cells.”

That the code may be optimized in terms of using stop codons to conserve cellular energy, splice site placement, and regulation clearly suggests that this code has not only been “exploited during evolution,” but may have also shaped it. Taken together, we have the echo of foresight.

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